Search results for "Chemical ligation"

showing 5 items of 5 documents

Chemical Ligation and Isotope Labeling to Locate Dynamic Effects during Catalysis by Dihydrofolate Reductase.

2015

Abstract Chemical ligation has been used to alter motions in specific regions of dihydrofolate reductase from E. coli and to investigate the effects of localized motional changes on enzyme catalysis. Two isotopic hybrids were prepared; one with the mobile N‐terminal segment containing heavy isotopes (2H, 13C, 15N) and the remainder of the protein with natural isotopic abundance, and the other one with only the C‐terminal segment isotopically labeled. Kinetic investigations indicated that isotopic substitution of the N‐terminal segment affected only a physical step of catalysis, whereas the enzyme chemistry was affected by protein motions from the C‐terminal segment. QM/MM studies support th…

Models MolecularTetrahydrofolate Dehydrogenasechemical ligationisotope effectsIsotope LabelingCommunicationprotein dynamicsProtein Dynamics | Very Important PaperLigationenzyme catalysisCatalysisCommunicationsmicroscopic mechanismsAngewandte Chemie (International ed. in English)
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Site-specific incorporation of perylene into an N-terminally modified light-harvesting complex II.

2010

Employing the utility of the native chemical ligation, site-specific attachment of an ultrastable perylene dye to a derivative of the major light-harvesting complex (LHCII) was demonstrated. Biochemical analysis of the conjugate indicated that the structure and function of LHCII remain largely unaffected by the N-terminal modification.

Molecular Sequence DataLight-Harvesting Protein Complexes010402 general chemistryPhotochemistry01 natural sciencesBiochemistry03 medical and health scienceschemistry.chemical_compoundPhysical and Theoretical ChemistryFLUORESCENCEPROTEIN LIGATIONPerylene030304 developmental biologyFluorescent DyesPlant Proteins0303 health sciencesSTABILITYOrganic ChemistryMICROSCOPYPlantsNative chemical ligationFluorescenceLIVE CELLS0104 chemical sciencesStructure and functionchemistryBiophysicsSMALL-MOLECULE PROBESCYSTEINEPeryleneDerivative (chemistry)DYESCysteineConjugateLight harvesting complex IIOrganicbiomolecular chemistry
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2015

Chemical ligation has been used to alter motions in specific regions of dihydrofolate reductase from E. coli and to investigate the effects of localized motional changes on enzyme catalysis. Two isotopic hybrids were prepared; one with the mobile N-terminal segment containing heavy isotopes (2H, 13C, 15N) and the remainder of the protein with natural isotopic abundance, and the other one with only the C-terminal segment isotopically labeled. Kinetic investigations indicated that isotopic substitution of the N-terminal segment affected only a physical step of catalysis, whereas the enzyme chemistry was affected by protein motions from the C-terminal segment. QM/MM studies support the idea th…

biologyStereochemistryChemistryProtein dynamicsNatural abundanceGeneral ChemistryCatalysisEnzyme catalysisCatalysisIntramolecular forceKinetic isotope effectDihydrofolate reductasebiology.proteinChemical ligationAngewandte Chemie International Edition
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Evaluating chemical ligation techniques for the synthesis of block copolypeptides, polypeptoids and block copolypept(o)ides: a comparative study

2015

In this work, we describe the synthesis of block copolypeptides, polypeptoids and block copolypept(o)ides by chemical ligation techniques. Polysarcosine (PSar), poly(N-e-trifluoroacetyl-L-lysine) (PLys(TFA)) and poly(γ-benzyl-L-glutamate) (PGlu(OBzl)) homopolymers of different polarities and end group functionalities but with similar average degrees of polymerization (Xn = 50 and 100) could be obtained by ring opening polymerization (ROP) of α-amino acid N-carboxyanhydrides (NCA) and postpolymerization modification reactions. In the next step, these polymers were applied to copper(I)-catalyzed azide–alkyne coupling (CuAAC), strain-promoted azide–alkyne coupling (SPAAC) and native chemical l…

chemistry.chemical_classificationPolymers and PlasticsOrganic ChemistryBioengineeringPolymerNative chemical ligationBiochemistryCombinatorial chemistryRing-opening polymerizationchemistry.chemical_compoundEnd-groupPolymerizationchemistryPeptide synthesisChemical ligationLigationPolymer Chemistry
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Synthesis and Biological Evaluation of a Multiantigenic Tn/TF-Containing Glycopeptide Mimic of the Tumor-Related MUC1 Glycoprotein

2006

solid-phase synthesisMolecular Sequence DataBreast Neoplasms010402 general chemistrymedicine.disease_cause01 natural sciencesBiochemistryantitumor agentsSolid-phase synthesisAntigenAntigens NeoplasmantigensCell Line TumorDrug DiscoverymedicineHumansAmino Acid SequenceGeneral Pharmacology Toxicology and PharmaceuticsPeptide sequenceMUC1Pharmacologychemistry.chemical_classification010405 organic chemistryMolecular MimicryMucin-1Organic ChemistryTransferringlycopeptidesoxime chemical ligationGlycopeptide0104 chemical sciencesMolecular mimicrychemistryBiochemistryTransferrinMolecular MedicineFemaleGlycoproteinChemMedChem
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